PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44988.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 335aa    MW: 37549.7 Da    PI: 9.8155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-12108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+++    Rt+ q+ s+ qky
       PHT44988.1 108 SWTEEEHRCFLIGLEKLGKGDWRGISKHYVASRTPTQVASHAQKY 152
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MVSMTKDARK CSHCGHNSRT CNSKGVGGIK LFGVWIDDNY NSNSINNNHG HGNIKIKMRK  60
IGDYESIRRS KSLGNLEHAA NYDIGGLEAG YLSDGPIHSL RHRKKGTSWT EEEHRCFLIG  120
LEKLGKGDWR GISKHYVASR TPTQVASHAQ KYFIRMSSID KKKRRPSIFD VYLKDLNPQI  180
PSKSSPSISN MVSEVSKDAS SRVVQLFDTC QIKGQASKGV PCATRERPPL SPSPVSRAFG  240
VRNLRHMPYM MGAPPNIHSV TPAKAGPTIS YMCGFNLDSV VFEDDSQKAK MKVKDMPPPP  300
CPQMLREEKY EEDTRQSMEQ TQESHPLNYH LSIET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KKKRR
2161166KKKRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-44MYB_related family protein