PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43523.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 292aa MW: 33215.6 Da PI: 9.561

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5e-33	49	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+P+d+e++ e+L++kv+ + + + +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + + PHT43523.1 49 LPAGVKFDPSDQEIL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVAKDGLVRHFFHRPSKAYTTGTRKRRKVHtdiqgnETR 142 799*********9.99999884554332...122222333336******.555556788**************744445455888 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l PHT43523.1 143 WHKTGKTRPVVF-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 189 ********.8899******6657999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MTCINIETLN NVPSSNENNT SVTKTRTCPS CGHLIKFEEK AGIHNLPGLP AGVKFDPSDQ 60 EILEHLEAKV RLDAHKLHPL IDEFIQTLEG ENGICYTHPE KLPGVAKDGL VRHFFHRPSK 120 AYTTGTRKRR KVHTDIQGNE TRWHKTGKTR PVVFKNKVKG HKKILVLYTN YGKQRKPEKT 180 NWVMHQYHLG DNEDEKEGEL VVSKVFYQTQ PRQCGGNNNN NNNNSLLKNN CPPIPQVRTN 240 IGQVGSQFVQ CFNPTTLISF EQFEHNTRPT TTMTMSPRLP NFNNLPDASF IP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	157	RKRRKVHTDIQGNETRWHKTGKTRPVVFKNK
2	128	158	RKRRKVHTDIQGNETRWHKTGKTRPVVFKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-119	NAC family protein