PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT43477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 417aa MW: 46546.7 Da PI: 7.8338 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.6e-09 | 130 | 150 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg PHT43477.1 130 VCSEFRK-GNCSRGDNCEFAHG 150 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence |
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRST LSSVDSDVFD SPKSGFGPET 60 DTLFQKFLPY NSLDDDDADP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD 120 PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPSR YRTEACKDGK NCKRKVCFFA 180 HTPRQLRVLP PSCHDSGSSP SPRNSPVDKK YRNLSHCCVF CHSVSASPTS TLIGMSHISP 240 PASPSFSPPL SPAHRTQFSS PVSRYTDRFG GLGSVESSSV GQMDPAGLMS YKDALTELVS 300 SLEAMNVNHE PVSSPASAAH QAHFDGNLPW LDVNFSNNNG YDDQQQFLLS PSTPLPSPIS 360 NSRSKFYARE FPSPSPISTS RLSFVEEPNN NSATNKCYSD NGLGGGPDLG WVNDLLT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 8e-79 | C3H family protein |