PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42797.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 415aa MW: 45479.5 Da PI: 5.6534

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.5e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ PHT42797.1 4 TCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 7*****************************65677777765 PP
2	zf-B_box	25.3	3.1e-08	46	87	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++++++++ C + ++ lC++C H + H++ PHT42797.1 46 LVCERCNSQPAIFRCVEERVSLCQNCDWMAHASsstgstHRR 87 68************************9998966777777776 PP
3	CCT	57.2	5.9e-20	358	401	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYk K+ktR+F+K++rY sRKa+A+ R RvKGrFvk+ PHT42797.1 358 RSDAVLRYKAKKKTRQFDKRVRYVSRKARADVRRRVKGRFVKAG 401 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGYTCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLVCER CNSQPAIFRC 60 VEERVSLCQN CDWMAHASSS TGSTHRRQAL SCYTGCPSAA ELSTIWSFLL EDPSVGDSTC 120 EQGMGSMSIT DCRPGDSKHS QVKDKSQDMS SALDEVNDLH NLVKSAPLVG SSMPSLDNDL 180 PNVEPPVGST NLTWSKVGNS GTKGSNLFDD DPFHDDFNMD EVDLSIENYE ELFGVSLDNH 240 DHLFKNEDID GLFGTKDMSV AESSFQGVNA VEGSAVGRVN AVQPACSNAA SAESMMSCKT 300 EPPTLCFARK QSSFSFSNLT GESSAGDYQD SGASSMLRIG EPPWCPPCPV SSMPSTRRSD 360 AVLRYKAKKK TRQFDKRVRY VSRKARADVR RRVKGRFVKA GDAYDYDPLS QTRSY

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGYTCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLVCER CNSQPAIFRC  60
VEERVSLCQN CDWMAHASSS TGSTHRRQAL SCYTGCPSAA ELSTIWSFLL EDPSVGDSTC  120
EQGMGSMSIT DCRPGDSKHS QVKDKSQDMS SALDEVNDLH NLVKSAPLVG SSMPSLDNDL  180
PNVEPPVGST NLTWSKVGNS GTKGSNLFDD DPFHDDFNMD EVDLSIENYE ELFGVSLDNH  240
DHLFKNEDID GLFGTKDMSV AESSFQGVNA VEGSAVGRVN AVQPACSNAA SAESMMSCKT  300
EPPTLCFARK QSSFSFSNLT GESSAGDYQD SGASSMLRIG EPPWCPPCPV SSMPSTRRSD  360
AVLRYKAKKK TRQFDKRVRY VSRKARADVR RRVKGRFVKA GDAYDYDPLS QTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-118	CO-like family protein