PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27698.5 Da    PI: 9.3416
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++s
  PHT41720.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFAS 59
                9***********************************************86 PP

2K-box78.71.4e-2681170998
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +  ++ + +q+e++ L+++++ Lq+++R+llGe+L+ Ls k+L +Le+q+e slk +R++K+++l+++i+el +k + +++en +L kk+
  PHT41720.1  81 NPMSEVKFWQREVSSLRQQLHCLQENHRKLLGEELSGLSTKDLTNLENQIEMSLKGVRKQKEQILTDEIRELNRKGNLIHQENVELYKKV 170
                 6678899********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFASN  60
SMRSTIDRYN KIKEENNNLM NPMSEVKFWQ REVSSLRQQL HCLQENHRKL LGEELSGLST  120
KDLTNLENQI EMSLKGVRKQ KEQILTDEIR ELNRKGNLIH QENVELYKKV NLIQQEYTEL  180
QKVSEQGCGS EPNGGVQATH TIRNGYDLHA PINLQLSQPQ TQKNGTSTSV MQLGLQLHYT  240
ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.18e-96MIKC_MADS family protein