PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41563.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 312aa    MW: 35673.4 Da    PI: 7.8486
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.5e-121452644
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +  r+ tf kR++g+lKK +E  +LC+++ ++i+++++g
  PHT41563.1 14 EKERNATFKKRKEGLLKKLYEFTTLCNVDGLMILYGPNG 52
                678999*******************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGRAKLKMEL ICKEKERNAT FKKRKEGLLK KLYEFTTLCN VDGLMILYGP NGSDPEIWTN  60
SSGNSSGGAT NSSLQQEEMQ KLIDQYKKES NLQSGSTKTF DLSDYFVDRN KKVEEELMKL  120
RKMNMEKRYP SWSGFMDRLS EIELRQVLTS LDYKVAEVKS RINSVRGNFP REYLMGGETT  180
RLSQFTHMVQ GGIELGGYNY EQLLQVPIYP YCNYSHQEMM MLTRTENNWQ YNNNGASSSS  240
TSGGIGNNNM MCAALYEATT THNMMGNNQL TYGAAAPTIL PPPPCIIFPM SQMQQHSWNK  300
NEQDDNVKFL PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-18M-type_MADS family protein