PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41522.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 698aa MW: 78496.3 Da PI: 7.4982

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.8e-22	167	271	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F ++ + +++ PHT41522.1 167 FCKTLTASDTSTHGGFSVLRRHADEClpqldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRQvYEgENG 263 99**************************964333..4459*******************************************9544344999 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r PHT41522.1 264 ELRVGVRR 271 9**997 PP
2	Auxin_resp	117.3	1.3e-38	297	379	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d+ ++rWp+S+WrsLk PHT41522.1 297 ASHAISTGTFFSVFYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDSTSSRWPDSEWRSLK 379 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MVDKMRATRL GWSVRVKRKR PSKKVREVGH SWHRILQIPM ANLSGNNFVG VAHPGAPKND 60 ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH QGLDQQLPSF NLPAKILCKV 120 MTVQLRAEPE TDEVYAQITL IPEQDQGEIT LPDPPLPEPQ KCTVHSFCKT LTASDTSTHG 180 GFSVLRRHAD ECLPQLDMSQ QPPWQELVAS DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV 240 SAKKLVAGDA FIFLRQVYEG ENGELRVGVR RLMRQLNNMP SSVISSHSMH LGVLATASHA 300 ISTGTFFSVF YKPRTSQSEF IVSVNKYLEA RNHKLSVGMR FKMRFEGEEV PERRFSGTIV 360 GVGDSTSSRW PDSEWRSLKV HWDEPSSILR PDRVSPWEME PLVTATPTNT QPPQRNKRAR 420 PPVLPSPVKE LPALGMWKSP VDSPSSFSYC DPSRARDLYP SPKLSSAAKG LGYGENGSMP 480 LSTKMYWPSQ SETCTESVAP ASEKRPANGY RLFGIELLDR PTIDETSLIS KPHAVMEDQP 540 DPSLDVECDQ HSEPLNPIPS LSFEPEKSPL RSSHESQSKQ IRSCTKVHMQ GKAVGRAVDL 600 TRLAGYDDLL KKLEEMFEIE GELIGSTKKW LVVFTDDEDD MMMVGDDPWR EFCSMVRKIY 660 VYTAEEAKRL SPKIKLPVDD VKPGNPVSDA TVSNEGKA

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MVDKMRATRL GWSVRVKRKR PSKKVREVGH SWHRILQIPM ANLSGNNFVG VAHPGAPKND  60
ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH QGLDQQLPSF NLPAKILCKV  120
MTVQLRAEPE TDEVYAQITL IPEQDQGEIT LPDPPLPEPQ KCTVHSFCKT LTASDTSTHG  180
GFSVLRRHAD ECLPQLDMSQ QPPWQELVAS DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV  240
SAKKLVAGDA FIFLRQVYEG ENGELRVGVR RLMRQLNNMP SSVISSHSMH LGVLATASHA  300
ISTGTFFSVF YKPRTSQSEF IVSVNKYLEA RNHKLSVGMR FKMRFEGEEV PERRFSGTIV  360
GVGDSTSSRW PDSEWRSLKV HWDEPSSILR PDRVSPWEME PLVTATPTNT QPPQRNKRAR  420
PPVLPSPVKE LPALGMWKSP VDSPSSFSYC DPSRARDLYP SPKLSSAAKG LGYGENGSMP  480
LSTKMYWPSQ SETCTESVAP ASEKRPANGY RLFGIELLDR PTIDETSLIS KPHAVMEDQP  540
DPSLDVECDQ HSEPLNPIPS LSFEPEKSPL RSSHESQSKQ IRSCTKVHMQ GKAVGRAVDL  600
TRLAGYDDLL KKLEEMFEIE GELIGSTKKW LVVFTDDEDD MMMVGDDPWR EFCSMVRKIY  660
VYTAEEAKRL SPKIKLPVDD VKPGNPVSDA TVSNEGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein