PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41448.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 722aa MW: 77270.3 Da PI: 7.6165

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.5e-16	457	503	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq PHT41448.1 457 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 503 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MPLSEFLKMA RGKLESAQQK ISSTTNLSSF PEDDLVELKW QNGQIVMQGQ SSSAKKSPVR 60 NDRSLSATGD RDKYTGNSST SRIGKFGLVD SMLDDMHLSV PTGELDLIQE DEEVPWLGYS 120 ADDSLQQDYC SQLLPEISDV TANEQPRQSL FGLMNKRGSS DKMIGDSHSV PVHNAVNFEQ 180 RNTSKVSPSS RFSLLSSLAS PKVQTPLPNL ESGASDIFNR KNSNTPISVL RDSSQSQVSA 240 GDVKNNKIQK QNMPGNRSNL LNFSHFSRPA AKLQNITGGS NVPGSSILEA KGKKDGEKGT 300 IGDNSVSAAA AENYSTSKKE NGFHHPTNAA SSQLDSKASG ANFHVRSCGV EQSDNVFREC 360 SSNNDDTRGQ FTGAKATKDI ADGEKNVEHG VACSSVCSGS SAERGSSEQP LNLKRKTRDN 420 EESECRSEDV EEESVGIKKT SAARGGTGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI 480 PNCNKADKAS MLDEAIEYLK TLQLQVQIMS MGAGFCVPPM MFPTGVQHMH AAQMPHFSPM 540 GLGMGMGMGM GMGFGMGMLE MNGRSSGCPI FPMPSVQGGH LPSPPIPAST AYPGMAVSNR 600 HAFAHPAQGL PMSIPRASVG PLAGQSSTGA AVPLNVVRPG IPGEIQSAPP ILDSKNPVHK 660 NSQIVHNAEP SRPIHQTCSQ VKATNEVLDK SVLQKNDQLP DVTDSAANNL ASRTNVPGNG 720 TG

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MPLSEFLKMA RGKLESAQQK ISSTTNLSSF PEDDLVELKW QNGQIVMQGQ SSSAKKSPVR  60
NDRSLSATGD RDKYTGNSST SRIGKFGLVD SMLDDMHLSV PTGELDLIQE DEEVPWLGYS  120
ADDSLQQDYC SQLLPEISDV TANEQPRQSL FGLMNKRGSS DKMIGDSHSV PVHNAVNFEQ  180
RNTSKVSPSS RFSLLSSLAS PKVQTPLPNL ESGASDIFNR KNSNTPISVL RDSSQSQVSA  240
GDVKNNKIQK QNMPGNRSNL LNFSHFSRPA AKLQNITGGS NVPGSSILEA KGKKDGEKGT  300
IGDNSVSAAA AENYSTSKKE NGFHHPTNAA SSQLDSKASG ANFHVRSCGV EQSDNVFREC  360
SSNNDDTRGQ FTGAKATKDI ADGEKNVEHG VACSSVCSGS SAERGSSEQP LNLKRKTRDN  420
EESECRSEDV EEESVGIKKT SAARGGTGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI  480
PNCNKADKAS MLDEAIEYLK TLQLQVQIMS MGAGFCVPPM MFPTGVQHMH AAQMPHFSPM  540
GLGMGMGMGM GMGFGMGMLE MNGRSSGCPI FPMPSVQGGH LPSPPIPAST AYPGMAVSNR  600
HAFAHPAQGL PMSIPRASVG PLAGQSSTGA AVPLNVVRPG IPGEIQSAPP ILDSKNPVHK  660
NSQIVHNAEP SRPIHQTCSQ VKATNEVLDK SVLQKNDQLP DVTDSAANNL ASRTNVPGNG  720
TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	462	467	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	6e-41	bHLH family protein