PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41253.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GeBP

Protein Properties

Length: 438aa MW: 47713.7 Da PI: 5.8723

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	101.2	9.1e-32	93	195	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 klfqrlw+++De+ lL+G++++++++ + + d++afy+ +k++ +++++k+qlveK+rrLKkKf++ ++k+ sgke++f+++h+q +fe+s+ PHT41253.1 93 KLFQRLWTDDDEVELLKGFLEYTTQRVLnnssaqQHHYDTTAFYDSIKSKFQLDFNKNQLVEKLRRLKKKFRTLRSKMGSGKEFAFKSAHEQVTFEISS 191 579******************999776555533445********************************************************* PP DUF573 94 kiWg 97 kiWg PHT41253.1 192 KIWG 195 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MSYLPMASHH HPGYNDDNLD YDVDVDGDDE SNSSPSVVAG EVTIAVAGVS TSDSHAPLIQ 60 AERKRPRIDD FAIPVILPGA VAKKPAAVDE SRKLFQRLWT DDDEVELLKG FLEYTTQRVL 120 NNSSAQQHHY DTTAFYDSIK SKFQLDFNKN QLVEKLRRLK KKFRTLRSKM GSGKEFAFKS 180 AHEQVTFEIS SKIWGNGGSY ARNSPGRGGP IGFPAQHPLE DGGLDDEDAH SNPNPNSDAI 240 VIYNSPKFNL NSNPNPNGPN GIDMKTRSQK RAPQVPAEVL KAEQQVFQPP GFSPNVPMPS 300 TNVNPMGATP MVGVAATAPV AAAPVVGVAD TAPVAASVPS LIEETVRNCV SPIFKELLNN 360 VANLNGPARG FGFGFGFGGM EMSPIPLGFG GGAMSMEMMK DEKWRKQQML ELEVYSKRLE 420 LVQDQVKAQL EELRSMGS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MSYLPMASHH HPGYNDDNLD YDVDVDGDDE SNSSPSVVAG EVTIAVAGVS TSDSHAPLIQ  60
AERKRPRIDD FAIPVILPGA VAKKPAAVDE SRKLFQRLWT DDDEVELLKG FLEYTTQRVL  120
NNSSAQQHHY DTTAFYDSIK SKFQLDFNKN QLVEKLRRLK KKFRTLRSKM GSGKEFAFKS  180
AHEQVTFEIS SKIWGNGGSY ARNSPGRGGP IGFPAQHPLE DGGLDDEDAH SNPNPNSDAI  240
VIYNSPKFNL NSNPNPNGPN GIDMKTRSQK RAPQVPAEVL KAEQQVFQPP GFSPNVPMPS  300
TNVNPMGATP MVGVAATAPV AAAPVVGVAD TAPVAASVPS LIEETVRNCV SPIFKELLNN  360
VANLNGPARG FGFGFGFGGM EMSPIPLGFG GGAMSMEMMK DEKWRKQQML ELEVYSKRLE  420
LVQDQVKAQL EELRSMGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	5e-52	GeBP family protein