PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT41210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 27064 Da PI: 6.8392 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.6e-40 | 41 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+aelal++ PHT41210.1 41 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTVTYEAQARLSDPVYGCVSTILALQQQVASLQAELALVQ 139 7***********************9989*********************************************************************99 PP DUF260 99 ee 100 ++ PHT41210.1 140 TQ 141 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MDEPPSDGAS DQNRRIRCLG KRAAGAMEPQ GSGALPASTA PCGACKFLRR KCINGCVFAP 60 YFGSDQGAAR FAAVHKVFGA SNVSKLLLHI PANRRQDAVV TVTYEAQARL SDPVYGCVST 120 ILALQQQVAS LQAELALVQT QVMNSRYAVA NAFQYSQQQQ QEQHVAILQP SYSNNSSVSN 180 NIKLINNING ASNFNNSTSS TAFDHQLHGS ADTCTANNSP SFDPIHQLHD EEEEESHNPL 240 AFTNHMFHSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-54 | LBD family protein |