PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40995.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 273aa MW: 30193.8 Da PI: 4.8805

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.3	6.3e-17	16	91	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + PHT40995.1 16 WARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 91 69*********************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGTLYAPQIH FVGLYWARIK KIMQADEDVG KIAMAVPVLV SKALELFLQD LCDRTYDITL 60 RRGAKTVNSL HLKHCVQSYN VFDFLREVVS KVPDYGHSDA AGETPKRRLG SFSLSYDIQE 120 MSPACNSGRG RGRGRGRGRG RVSRADRELS RPDMQLESCA TVQQSGQQNP NPGTQTENSA 180 EPEGSPKQDS TVCDKETSVI TAPSLKVNVD YSIDKPAAPE IAACTPSPKP ANEKAEEGPQ 240 WSLEMDRMVI DPTHMSQLNT SVAEEEEDYD EEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	138	RGRGRGRGRG
2	129	139	RGRGRGRGRGR
3	131	140	RGRGRGRGRG
4	131	141	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-51	NF-YC family protein