PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40717.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24624.1 Da    PI: 8.6889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF953.3e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+snrqvt+skRrngilKKA+E+SvLCda+v+viif+++gk++e+ss
  PHT40717.1  9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFATSGKMHEFSS 59
                79***********************************************96 PP
2K-box904.4e-3069164196
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                 y+k +g++l++ak+e+l++e++++kk ++n+q e+Rhl+Ged++sL+++eL+ Le+ Le++l++iR+k+ne+++++ +++q +e+e+++ n +Lr+
  PHT40717.1  69 YHKLTGRRLWDAKHENLDNEINRVKKDNDNMQIELRHLKGEDISSLNYRELMILEDGLENGLTSIRDKQNEFMRMMRKKTQGMEEEQEQLNCQLRQ 164
                 78999999**************************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD ARVSVIIFAT SGKMHEFSST  60
SLVDILDQYH KLTGRRLWDA KHENLDNEIN RVKKDNDNMQ IELRHLKGED ISSLNYRELM  120
ILEDGLENGL TSIRDKQNEF MRMMRKKTQG MEEEQEQLNC QLRQLEIASM NRNMGEIGEV  180
FEQTRGNHEY QMPFAFRVQP MQPNLQERF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-78MIKC_MADS family protein