PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT40655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 409aa MW: 45629.2 Da PI: 8.3585 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.6e-38 | 44 | 141 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rr+Ca+dC+lapyfpa+++k+f n+hklFG+sn+lk+lk++++ ++++am++l++eA++ra dPv G++++il+l++q++ +ael+ + PHT40655.1 44 ACAACKYQRRRCAPDCPLAPYFPAKRQKDFLNAHKLFGVSNILKVLKNVSPFQKDNAMKALIFEANIRAGDPVGGCYRTILNLHRQINLCQAELQFVY 141 7********************************************************************************************99875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 409 aa Download sequence |
MTNVVNNNTQ NISYLPSSLT TRSSTAAARV ASQGGGSGGN GSQACAACKY QRRRCAPDCP 60 LAPYFPAKRQ KDFLNAHKLF GVSNILKVLK NVSPFQKDNA MKALIFEANI RAGDPVGGCY 120 RTILNLHRQI NLCQAELQFV YREIFRVKAA AIQVQPNINT KACSLNEINN SILSFDFSPI 180 PCLHEFDIST SIGEGSNSQI VEGERLEGFN NEKFVAKTVM SICNDKQSIV EHGDFKPYFG 240 NFHDYKGKGI ATELRSCLLD LEYKKILSSH LEIMLKWYLL RLEYIFDLMA ERGATRAFST 300 EATRVGQYMK MGPPDFMGVK VDEDPHGFLN KLEKIFQCVY GMIILSYSSL IFIVVSSESD 360 DRLRGKMPPH RACRNNEQPQ PVDPLSEHVS HAKFQEACQA LAQAVTVNA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-34 | LBD family protein |