PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT39795.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 313aa    MW: 34944.9 Da    PI: 4.5303
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT39795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.42.6e-10138187149
      DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 
                 +C aCk  r+ +C+++C ++pyfp +++ ++ ++ + F+++n+ +  +++
  PHT39795.1 138 RCGACKGGRNqTCPSNCRFRPYFPPNSTDDYVAIIRTFSRANIERWANEI 187
                 6*****988879*******************************9887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MADQDEEVDH PPEDANGNTA DQNEEPLFDF AELPQHDFEQ LLQDTDEHPL DHHEIPQGLD  60
QQPLEYQHHQ HAHVIHDQPE NAYVHVDHHL DDLAVHQDPP PLEPQHQAMD NHNNAQPNPD  120
PLDILQDIEP PPLQGDHRCG ACKGGRNQTC PSNCRFRPYF PPNSTDDYVA IIRTFSRANI  180
ERWANEISIG EGLSFSEEEL GRRNILITNG KYGLRSSVPS QAPAAAEQRP DANFQPLRAQ  240
PPAHQPDPIP PGTSQRQAGA STRYIGPAVQ HSDADFQPLQ AQPPAHQPDP IPPGTSQAQD  300
DASTSYIGYK RCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.17e-07LBD family protein