PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39066.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 679aa MW: 77303.4 Da PI: 5.339

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.6	4.4e-17	247	293	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl+++F ++ ++AA +L+v+ ++ KriCR+ GI+RWP+ kik PHT39066.1 247 SVSLEDLKEQFGKKREEAAESLNVSISTFKRICRERGISRWPSSKIK 293 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MLLRDEEEVE LGQMELEISN SMVNPLISSP GSTCWQIEQL WEPDNMLYFD YSLLPASPME 60 DFTLWNHSWS PPPPPHHDHQ ESARMKRAEY IAPLDLLSVE ALKKAIEEFM RFRKEHRKQK 120 SIIDVRFEEK AYTAGTSQVS LSMLSMETKS ENPVCGKPVQ IVDESPKFQC MQLDAKSPAE 180 ESPLHVVPSW GDCALPVSFQ QRSITEHVNL KRKVDTGPSG QGVTIFELCN KQKMNKKYKK 240 TWRIGDSVSL EDLKEQFGKK REEAAESLNV SISTFKRICR ERGISRWPSS KIKRERLLLS 300 SLSCNGTDRV AANTQMHVTT GLTALASTYS VKSNQQKEQS LNLSVNIENG TSSNGTLLEK 360 YEDGDRENIM IQVEDSANQE LEYIPQEFQP ACDSLIPDVP TILHRLPQER TPAEDATSSA 420 PGQQGEHIAR QIEMTSEISQ LEKQHLGKES FKCDSRNVSE PIQGHAIVDS TQMEVQPFLE 480 SVSTRPFNSF SCNENTVKNT KLLFDDLIAL PLKDLIDPDN ETSMKKTLSI LADNLSLFSE 540 EQAKQILELS VYFPTLVHNW REFSRSQMYN QKSLAETGRI IDLAETSVKD EESLNVRYEE 600 LKRKEQELRA QLEAVQKEKA GIAEQRNEKS KQTKHLVSLA EEKAASSTKE KHMMKIATTK 660 LNNLVDQWAK IQSFFIYFC

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MLLRDEEEVE LGQMELEISN SMVNPLISSP GSTCWQIEQL WEPDNMLYFD YSLLPASPME  60
DFTLWNHSWS PPPPPHHDHQ ESARMKRAEY IAPLDLLSVE ALKKAIEEFM RFRKEHRKQK  120
SIIDVRFEEK AYTAGTSQVS LSMLSMETKS ENPVCGKPVQ IVDESPKFQC MQLDAKSPAE  180
ESPLHVVPSW GDCALPVSFQ QRSITEHVNL KRKVDTGPSG QGVTIFELCN KQKMNKKYKK  240
TWRIGDSVSL EDLKEQFGKK REEAAESLNV SISTFKRICR ERGISRWPSS KIKRERLLLS  300
SLSCNGTDRV AANTQMHVTT GLTALASTYS VKSNQQKEQS LNLSVNIENG TSSNGTLLEK  360
YEDGDRENIM IQVEDSANQE LEYIPQEFQP ACDSLIPDVP TILHRLPQER TPAEDATSSA  420
PGQQGEHIAR QIEMTSEISQ LEKQHLGKES FKCDSRNVSE PIQGHAIVDS TQMEVQPFLE  480
SVSTRPFNSF SCNENTVKNT KLLFDDLIAL PLKDLIDPDN ETSMKKTLSI LADNLSLFSE  540
EQAKQILELS VYFPTLVHNW REFSRSQMYN QKSLAETGRI IDLAETSVKD EESLNVRYEE  600
LKRKEQELRA QLEAVQKEKA GIAEQRNEKS KQTKHLVSLA EEKAASSTKE KHMMKIATTK  660
LNNLVDQWAK IQSFFIYFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-10	Nin-like family protein