PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39065.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 848aa MW: 95224.5 Da PI: 7.0313

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	41.3	3e-13	531	572	4	45
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 isledl++++ ++ ++AA +v++++ Kr+CR+ GI RWP PHT39065.1 531 LISLEDLKQNYGKKRAEAAERFQVSVSTFKRRCREVGILRWP 572 599*************************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence
MSVKEYSLKF TQLVRYAPNV VADNRFSMGT LSWQDQCLSD HDGILSTVSK NVANYSTAVH 60 GENVETMHDD SNNNNNEPDP AHIVSKKLFC FADGHILDPH HVDLFCLDLL KRTYQLTIHR 120 HNESDSFSLT KVRVVSSDLV QLLEVFLLSK VRLMFLIDEE YWLLTDELNL KGTGQSHLQM 180 EVRLAFSLQN VMKSTMRYAI SHAASCRKTN SQNVKSFVVC EFENELFLDQ NADCRGKSKS 240 FIPCPSNIKL SPCRVASVVY SLYLYGEVHE DFTILGCVFD IGSSLCSSST SVKFSYRTEH 300 HSSPGHSQDY DSHGTLSLSP LLPSEESPVG CFKIAYCPQR ARLTSKSHRS PASKKVSLNP 360 AAFLSVSYQK LQYSSGFVSS KNVFISLEVP PLRSSISRIV SYINFASSRI AKSIPILDSR 420 FTLQLGLGVK RMGVRQKQYG LSPYPDSAVF QSSSNGEMLL EAFNDNANAS NEIQEVIVDS 480 QTNIQNKRKK PSATRSLEDA SNEIQEVIVD SQTNIQNKRK KPSTTQCAAS LISLEDLKQN 540 YGKKRAEAAE RFQVSVSTFK RRCREVGILR WPPVSGQKRK MKEKEADNID ESNNFEEKTS 600 AILNCTPKRQ AVDCGTKVSS CYNSTSGTTE GIYGYAVDDM NSTPMGVQLF LDSTSVQPLN 660 STSCDENSGQ KTKLLFDNLI ALPLKDLIDP ENETSMGKAL SILADNLSLF SEEQAEQILE 720 LSVDFHALVH SWRQYSQSQG RSQKSLAETE KIRDLAETSV KDEESLNVRY EELERKEQEL 780 MAQLEAVQKE KAGIAEQRNE KSKQTKYLVS LAEEKTTSTT KEKHMMKIAT TKLNNLVDQW 840 NKIQSFFI

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence

MSVKEYSLKF TQLVRYAPNV VADNRFSMGT LSWQDQCLSD HDGILSTVSK NVANYSTAVH  60
GENVETMHDD SNNNNNEPDP AHIVSKKLFC FADGHILDPH HVDLFCLDLL KRTYQLTIHR  120
HNESDSFSLT KVRVVSSDLV QLLEVFLLSK VRLMFLIDEE YWLLTDELNL KGTGQSHLQM  180
EVRLAFSLQN VMKSTMRYAI SHAASCRKTN SQNVKSFVVC EFENELFLDQ NADCRGKSKS  240
FIPCPSNIKL SPCRVASVVY SLYLYGEVHE DFTILGCVFD IGSSLCSSST SVKFSYRTEH  300
HSSPGHSQDY DSHGTLSLSP LLPSEESPVG CFKIAYCPQR ARLTSKSHRS PASKKVSLNP  360
AAFLSVSYQK LQYSSGFVSS KNVFISLEVP PLRSSISRIV SYINFASSRI AKSIPILDSR  420
FTLQLGLGVK RMGVRQKQYG LSPYPDSAVF QSSSNGEMLL EAFNDNANAS NEIQEVIVDS  480
QTNIQNKRKK PSATRSLEDA SNEIQEVIVD SQTNIQNKRK KPSTTQCAAS LISLEDLKQN  540
YGKKRAEAAE RFQVSVSTFK RRCREVGILR WPPVSGQKRK MKEKEADNID ESNNFEEKTS  600
AILNCTPKRQ AVDCGTKVSS CYNSTSGTTE GIYGYAVDDM NSTPMGVQLF LDSTSVQPLN  660
STSCDENSGQ KTKLLFDNLI ALPLKDLIDP ENETSMGKAL SILADNLSLF SEEQAEQILE  720
LSVDFHALVH SWRQYSQSQG RSQKSLAETE KIRDLAETSV KDEESLNVRY EELERKEQEL  780
MAQLEAVQKE KAGIAEQRNE KSKQTKYLVS LAEEKTTSTT KEKHMMKIAT TKLNNLVDQW  840
NKIQSFFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-06	Nin-like family protein