PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT38200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 27026.8 Da PI: 5.7555 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.6 | 2.5e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC k+C++apyf+ eq + +fa++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk PHT38200.1 7 PCGACKFLRRKCIKGCIFAPYFCYEQgATHFAAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLK 105 7*************************89********************************************************************999 PP DUF260 99 ee 100 e+ PHT38200.1 106 EQ 107 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MTGTGSPCGA CKFLRRKCIK GCIFAPYFCY EQGATHFAAI HKVFGASNVS KLLAHIPVSD 60 RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKEQAAA QNLQNGSNYA 120 NPNYDKFQDV QSWFHQSENP STMPQFDHSS LTSNNNIGSS TQYYGSENNY IMTSSNYHMG 180 SNYENINLVI PKENMSSFEE GGSCSVDSSF DMQTDHYNNR QWTFQDDADD LQSVAFRYLQ 240 HT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 8e-57 | LBD family protein |