PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT34845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 291aa MW: 32008.5 Da PI: 4.7243 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.5 | 3.5e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ +++++++ ++fdfl d+v r PHT34845.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 86 5789**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence |
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLKKGAK 60 TMNSFHLKQC IQSFNVFDFL KDVVSRVPDL GGSDAGAESA TKRRKVADED DHDSDDDIKR 120 NHTNETANNS SSGRGRGRGR GRGRGRGARA AEKGDSNVHS EKLEDPAGVS HQKDDEKPKQ 180 NDERMVDYVA EPAADTKNIS AAKSSEAVPA RNFDLNIDLN ESVESTPIPS DAPSSSTAPP 240 PPEVLLPPEV KHEEIPGWSL SEMEKMAIDP IQLANLNKGL DEEEEDYDEE G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 143 | RGRGRGRGRG |
2 | 134 | 144 | RGRGRGRGRGR |
3 | 136 | 145 | RGRGRGRGRG |
4 | 136 | 146 | RGRGRGRGRGR |
5 | 138 | 147 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 1e-58 | NF-YC family protein |