PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34407.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 703aa MW: 76034.9 Da PI: 9.0497

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.2	1.8e-67	493	657	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskk 98 +++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++ a+++ + a+ +++++k++r +s++++++s+t++s++++++ PHT34407.1 493 SSTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMAGATTNVNVAAGsssqSTSSAKKPRLVNSQTTTTASHTSTSNNTPPR 591 5679*******************************************988877665544333344577788899999999999********** PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++tss lP +v+++avf+cvrv+svd+ge+e+aYq+av igGhvfkG+LydqGl+e PHT34407.1 592 SFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDEGEDEYAYQAAVRIGGHVFKGFLYDQGLDE 657 999******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MDFVRGLPRS RRQHDSIRII IDRMTKSSHF LPIHSSYIVE DYVKLYDREL VRLHGVPLSI 60 ILDRGTQFTS HFCKAFQKGL GTQVHLRTAF QPQTDGQAER TIQTLEDMLR ACVINFKGEV 120 ALVGTNLVFD AIEKIQMITE RLKTDQNHHK SYTDVRRRDL EFVVRDLVYL KIFPMKGVKR 180 FDKKGKLSPR YVGPYRILSH YGMVAYELEL PADLASVHPV FHVSLFKKCI GDPAVVVSLE 240 SIDCLISFSY AKQEVTKPST KVRETVDGKP KVEEASKAGA VATARRLLQA SDSGAFADWV 300 ANSSTSSAAA IGDLSLGFNA GTTISGGGGN GTTGGGGGGH SGMWSASSSR QMQINYGLQP 360 EMGMFVVHPA SFHHHHHNQE STINFDPHHH HQSINVTSNL SNTSATNTSL GVGVGVIPLL 420 TATPLTNMVS FDDQDLVSRN RGGNDGSGFQ FFSNQQPQNS TNYTKNSTSN ILGGGSGNIG 480 GNNNIGGSVS STSSTTCQDC GNQAKKDCTH RRCRTCCKSR GFDCTTHVKS TWVPAARRRE 540 RQLMAGATTN VNVAAGSSSQ STSSAKKPRL VNSQTTTTAS HTSTSNNTPP RSFDTSSSHQ 600 DASFKASLPG QVRAPAVFKC VRVTSVDEGE DEYAYQAAVR IGGHVFKGFL YDQGLDEGKN 660 NNNFPNLSDL HLGGGNGNEP SDLYATSTGG GLLGGSNYGN PIN

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MDFVRGLPRS RRQHDSIRII IDRMTKSSHF LPIHSSYIVE DYVKLYDREL VRLHGVPLSI  60
ILDRGTQFTS HFCKAFQKGL GTQVHLRTAF QPQTDGQAER TIQTLEDMLR ACVINFKGEV  120
ALVGTNLVFD AIEKIQMITE RLKTDQNHHK SYTDVRRRDL EFVVRDLVYL KIFPMKGVKR  180
FDKKGKLSPR YVGPYRILSH YGMVAYELEL PADLASVHPV FHVSLFKKCI GDPAVVVSLE  240
SIDCLISFSY AKQEVTKPST KVRETVDGKP KVEEASKAGA VATARRLLQA SDSGAFADWV  300
ANSSTSSAAA IGDLSLGFNA GTTISGGGGN GTTGGGGGGH SGMWSASSSR QMQINYGLQP  360
EMGMFVVHPA SFHHHHHNQE STINFDPHHH HQSINVTSNL SNTSATNTSL GVGVGVIPLL  420
TATPLTNMVS FDDQDLVSRN RGGNDGSGFQ FFSNQQPQNS TNYTKNSTSN ILGGGSGNIG  480
GNNNIGGSVS STSSTTCQDC GNQAKKDCTH RRCRTCCKSR GFDCTTHVKS TWVPAARRRE  540
RQLMAGATTN VNVAAGSSSQ STSSAKKPRL VNSQTTTTAS HTSTSNNTPP RSFDTSSSHQ  600
DASFKASLPG QVRAPAVFKC VRVTSVDEGE DEYAYQAAVR IGGHVFKGFL YDQGLDEGKN  660
NNNFPNLSDL HLGGGNGNEP SDLYATSTGG GLLGGSNYGN PIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	186	KRFDKKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	5e-66	SRS family protein