PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT34355.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 271aa    MW: 29250.5 Da    PI: 7.6688
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT34355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.74e-1521514878
                SEEETTT--SS--S-STTTT-------S--- CS
         SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                rfh+l efD++krsCr+rL++hn+rrrk+q+
  PHT34355.1 21 RFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 51
                9***************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MGVMQTSVDA ESITAGIKFV RFHSLVEFDD GKRSCRKRLD GHNRRRRKPQ PDSMAKNSGL  60
LNGQQGTKLL SFSSQQIFPS AVVSSTWAGV VKTDSDMVLY NNQSHINCMD SQNSFAHSSA  120
HSYKGGSQLQ FLQGIGRSLP EASSICPPLL DHPTSAAGIS SSGQKIFCSG LSEVDSDRAL  180
SLLSSAPAVT REIGLSNMVQ QPASIPCPRS HGLHYGGLSH FPFAQDFNSK PQDSHVSNSS  240
SPLHFHEVLQ NAQDGPSTSD GSQQTLAFMW D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13249KRSCRKRLDGHNRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-21SBP family protein