PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT33989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 269aa MW: 29788.6 Da PI: 9.7128 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 212.5 | 4.2e-66 | 92 | 230 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+++++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+eG+vrk+lkvePl PHT33989.1 92 SIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPTAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPL 190 7************************************************************************************************** PP Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 pdGsG+f+nlsv+n+l++ +e++++Pv+kaef+vl s+++ PHT33989.1 191 PDGSGHFFNLSVQNKLINLDENIYIPVTKAEFTVLVSAFN 230 ***********************************99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence |
MSNLSLSPSS ITLNLQNPTK PPPYLSFSSS INSSTIFAPL NSNAVKFSTF TQKTAFSRSL 60 ALTCRHSSYF EPQQQQQQLQ GASTPKVFVG YSIYKGKAAL TVEPRSPEFS PLDSGAFKLS 120 REGMVMLQFA PTAGVRQYDW SRKQVFSLSV TEIGSIISLG AKDSCEFFHD PNKGRSDEGR 180 VRKVLKVEPL PDGSGHFFNL SVQNKLINLD ENIYIPVTKA EFTVLVSAFN FVVPYLLGWH 240 TAANSFKPED TSRSNNANPR SGAELEWNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-110 | Whirly family protein |