PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT33989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Whirly
Protein Properties Length: 269aa    MW: 29788.6 Da    PI: 9.7128
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT33989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly212.54.2e-66922301139
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+++++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+eG+vrk+lkvePl
  PHT33989.1  92 SIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPTAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPL 190
                 7************************************************************************************************** PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 pdGsG+f+nlsv+n+l++ +e++++Pv+kaef+vl s+++
  PHT33989.1 191 PDGSGHFFNLSVQNKLINLDENIYIPVTKAEFTVLVSAFN 230
                 ***********************************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MSNLSLSPSS ITLNLQNPTK PPPYLSFSSS INSSTIFAPL NSNAVKFSTF TQKTAFSRSL  60
ALTCRHSSYF EPQQQQQQLQ GASTPKVFVG YSIYKGKAAL TVEPRSPEFS PLDSGAFKLS  120
REGMVMLQFA PTAGVRQYDW SRKQVFSLSV TEIGSIISLG AKDSCEFFHD PNKGRSDEGR  180
VRKVLKVEPL PDGSGHFFNL SVQNKLINLD ENIYIPVTKA EFTVLVSAFN FVVPYLLGWH  240
TAANSFKPED TSRSNNANPR SGAELEWNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-110Whirly family protein