PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT33942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20754.8 Da PI: 9.9679 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.9 | 3e-19 | 16 | 56 | 4 | 44 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 n+ n vtfskRr g++KKA+ELS+LC++e+a ++fs++ PHT33942.1 16 MNQNNLPVTFSKRRDGLFKKASELSTLCGVEIATVVFSPSK 56 5899999*******************************975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence |
MRKPTGRKKI KIEKMMNQNN LPVTFSKRRD GLFKKASELS TLCGVEIATV VFSPSKTSVY 60 SIGHPCVLSV VDKFLNPPPD TNSPQPLAKP YQNKDVTKME KLIETEEKRA LRLQSANTKG 120 SYEGLNYFQL QELCDTLEAK LKMTERVEIQ QKESGIPFSF KSYGYALAPR ENISSTSDVG 180 PSRSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-28 | M-type_MADS family protein |