PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT33939.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20955.9 Da    PI: 9.83
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT33939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.8e-181455243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                + +n+ n   tfskRr g++KK +ELS+LC++e+a i+fs++
  PHT33939.1 14 KMKNQNNLAATFSKRRDGLFKKVSELSTLCGIEIATIVFSPS 55
                57899***********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MRKPTGHKKI KIEKMKNQNN LAATFSKRRD GLFKKVSELS TLCGIEIATI VFSPSKITIY  60
SIGHPCVHSL VDKFLNPPPE TNSPQPLAQP YQNKDVTKME KLIEAEEKRA LRLQSTNTKD  120
SYEGLNYFKF QELSDTLEEK LKLNERVEIQ QKESGIPFSF KSYGYALAPR ENISSTSDVG  180
PSRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-26M-type_MADS family protein