PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33860.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 343aa MW: 39174.2 Da PI: 8.9662

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + ++G g+W++ +++ g+ R++k+c++rw +yl PHT33860.1 14 KGPWTAEEDQKLLSFIDKHGCGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	46.5	8.3e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ +++++++lG++ W++Ia +++ Rt++++k++w++ PHT33860.1 67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGKSKCSDKE GLKKGPWTAE EDQKLLSFID KHGCGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPKV TNNLNGVASS KYVATLSHMA EWESARLEAE ARLVRKSKDY KILFNNNNYN 180 INRSTISQQL PYYQLPCLDI LKAWQMSSTK LPTINDISAI LLNNSRNNNL ESSIPSTLNS 240 SENLFVNNNV PTTTANVRDD HQNPPNLSTF ESCFEDDQLQ TDLPSFMQEF SGLFPEYYTQ 300 NSTNIQVDNF MGSCSGDFED NKLINWNNFP NYLVNSPIGS PVF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGKSKCSDKE GLKKGPWTAE EDQKLLSFID KHGCGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG  120
IDPMTHKPKV TNNLNGVASS KYVATLSHMA EWESARLEAE ARLVRKSKDY KILFNNNNYN  180
INRSTISQQL PYYQLPCLDI LKAWQMSSTK LPTINDISAI LLNNSRNNNL ESSIPSTLNS  240
SENLFVNNNV PTTTANVRDD HQNPPNLSTF ESCFEDDQLQ TDLPSFMQEF SGLFPEYYTQ  300
NSTNIQVDNF MGSCSGDFED NKLINWNNFP NYLVNSPIGS PVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	3e-92	MYB family protein