PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33724.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 491aa MW: 53741.3 Da PI: 7.3241

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.1	4.3e-34	210	266	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+ PHT33724.1 210 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 266 8**************************************.*************8 PP
2	WRKY	107.1	8.7e-34	376	434	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+ PHT33724.1 376 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 434 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MAENEGLSSS SATSRGQLVR PTITLPPRNS MDSLFSGGIS PGPMTLVSSF FSDNDPDSEC 60 RSFSQLLAGA MTSPAGISGV RPGFAPPSTA APAMTPTFSV PPGLNPTNLF DGFFSPGQGP 120 FGMSHQQVLA QLTAQASQPQ SQMHIQPDYS SSSAATALSM SPFQSLTSNT AANQQIPPAL 180 DPNIMKESSD VSLSDQRSEP ASFVVDKPAD DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC 240 PVKKKVERSL DGQVTEIIYK GQHNHQPPQA SKRSKESGNP NGNYNLQGTY EPKEGEPSYS 300 LRMKDQESSL ANDQISGSSD SEEVGNAETR VDGRDIDERE SKRRAVEVQT SEAVCSHRTV 360 AEPRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY KCTSQGCNVR KHVERAASDP 420 KAVITTYEGK HNHDVPAARN SSHNTANNST SQLRPHNPVF DKPTAMRRAD FPSNEQQQPI 480 ALLRFKEEQI T

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MAENEGLSSS SATSRGQLVR PTITLPPRNS MDSLFSGGIS PGPMTLVSSF FSDNDPDSEC  60
RSFSQLLAGA MTSPAGISGV RPGFAPPSTA APAMTPTFSV PPGLNPTNLF DGFFSPGQGP  120
FGMSHQQVLA QLTAQASQPQ SQMHIQPDYS SSSAATALSM SPFQSLTSNT AANQQIPPAL  180
DPNIMKESSD VSLSDQRSEP ASFVVDKPAD DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC  240
PVKKKVERSL DGQVTEIIYK GQHNHQPPQA SKRSKESGNP NGNYNLQGTY EPKEGEPSYS  300
LRMKDQESSL ANDQISGSSD SEEVGNAETR VDGRDIDERE SKRRAVEVQT SEAVCSHRTV  360
AEPRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY KCTSQGCNVR KHVERAASDP  420
KAVITTYEGK HNHDVPAARN SSHNTANNST SQLRPHNPVF DKPTAMRRAD FPSNEQQQPI  480
ALLRFKEEQI T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-153	WRKY family protein