PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT33666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 144aa MW: 16214.5 Da PI: 8.685 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 135.9 | 5e-42 | 4 | 143 | 3 | 159 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 v+ss +++Cyv+CnfC+t+lav +P++ l+ +vtv+CGhC++l ++ + q++ + + +l+ +++k + ++++sas s+sse l PHT33666.1 4 VQSSEQHLCYVRCNFCSTVLAVGIPYKRLMDTVTVKCGHCSNLSFLSTRPPIQAQCFDH----------QPTLQGYCNEFKNKGQASSSAS-STSSEPL 91 5678889**********************************986655555444433322..........2233333344443333333332.3333343 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + p+++ v++PPek+ r Psaynrf+keeiqrik++nP+i hreafsaaakn PHT33666.1 92 ------SPPHAHFVVKPPEKKHRLPSAYNRFMKEEIQRIKTENPEIPHREAFSAAAKN 143 ......456677789******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence |
MDYVQSSEQH LCYVRCNFCS TVLAVGIPYK RLMDTVTVKC GHCSNLSFLS TRPPIQAQCF 60 DHQPTLQGYC NEFKNKGQAS SSASSTSSEP LSPPHAHFVV KPPEKKHRLP SAYNRFMKEE 120 IQRIKTENPE IPHREAFSAA AKNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69180.1 | 7e-53 | YABBY family protein |