PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33665.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 548aa MW: 60162.4 Da PI: 7.5428

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.2	8.8e-42	233	309	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q PHT33665.1 233 VCQVHGCNKDLSSSKDYHKRHKVCDEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 309 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MEPLSYALEG GGLVFPDNVE LPADTTSRSR NIVKEWNLNP FCDVDKSICG FSEEITESTE 60 LLGSGIADIL KKSAASNPCP GVLSGEMGDG CGKMLSSGSM FTFEPIPGEA GLGAMFNHSG 120 TKSNNPMSSS LMDLKLEELT DHGELRTSQS SKESSVLSSP DSSLPTGKAQ TKSLRSQFSI 180 SQVRGQKEEE SATVYRDSKN NQSLKRNSSL SSVNPALQGK KLRTTNFHSE VPVCQVHGCN 240 KDLSSSKDYH KRHKVCDEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG 300 HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN SKHVKLELKP 360 FCISELAVSV KNGQFPAKSI QHQYGMRKQD PSKVHVGATF SVPEISVGQN SSCAPSLLST 420 GISSTLPWMV QGNHNAYIKG DHLNLVKSAR VGVSSSSTPI ELYSSEVVEQ DGVVVQVPGS 480 EAVSFGIQRD HGHGQRSSAI ISKNCLSPEG GPTMDLVQLS SHLQRVEQQK NSVQVKQEND 540 IFCAFTST

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MEPLSYALEG GGLVFPDNVE LPADTTSRSR NIVKEWNLNP FCDVDKSICG FSEEITESTE  60
LLGSGIADIL KKSAASNPCP GVLSGEMGDG CGKMLSSGSM FTFEPIPGEA GLGAMFNHSG  120
TKSNNPMSSS LMDLKLEELT DHGELRTSQS SKESSVLSSP DSSLPTGKAQ TKSLRSQFSI  180
SQVRGQKEEE SATVYRDSKN NQSLKRNSSL SSVNPALQGK KLRTTNFHSE VPVCQVHGCN  240
KDLSSSKDYH KRHKVCDEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG  300
HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN SKHVKLELKP  360
FCISELAVSV KNGQFPAKSI QHQYGMRKQD PSKVHVGATF SVPEISVGQN SSCAPSLLST  420
GISSTLPWMV QGNHNAYIKG DHLNLVKSAR VGVSSSSTPI ELYSSEVVEQ DGVVVQVPGS  480
EAVSFGIQRD HGHGQRSSAI ISKNCLSPEG GPTMDLVQLS SHLQRVEQQK NSVQVKQEND  540
IFCAFTST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-52	SBP family protein