PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT33374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26721.4 Da PI: 6.8739 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.2e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C l+p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q +q+++e PHT33374.1 4 SCNGCRVLRKGCSETCSLRPCLqwirsPESQANATVFLAKFYGRAGLINLINAGPHHLRPAIFKSLLYEACGRIINPVNGSVGLMCSGNWQRCQEAVES 102 6***********************************************************************************************998 PP DUF260 95 allk 98 +l + PHT33374.1 103 VLNG 106 8765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MRMSCNGCRV LRKGCSETCS LRPCLQWIRS PESQANATVF LAKFYGRAGL INLINAGPHH 60 LRPAIFKSLL YEACGRIINP VNGSVGLMCS GNWQRCQEAV ESVLNGSTIM QVPINDESNN 120 NNTDQIVPLK SCDIRHIAKN SSNTEQVIRT RNGRFKRKAS NSVAEEAAEE YLMTNEPPSK 180 FSITGWDQLN EMDELKRAPS HDSFSVETVE PTLLVNRVDP VKLEENGDVG LELTLGLMSP 240 I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-72 | LBD family protein |