PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT33374.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 241aa    MW: 26721.4 Da    PI: 6.8739
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT33374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.2e-294106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C l+p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q +q+++e 
  PHT33374.1   4 SCNGCRVLRKGCSETCSLRPCLqwirsPESQANATVFLAKFYGRAGLINLINAGPHHLRPAIFKSLLYEACGRIINPVNGSVGLMCSGNWQRCQEAVES 102
                 6***********************************************************************************************998 PP

      DUF260  95 allk 98 
                 +l +
  PHT33374.1 103 VLNG 106
                 8765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MRMSCNGCRV LRKGCSETCS LRPCLQWIRS PESQANATVF LAKFYGRAGL INLINAGPHH  60
LRPAIFKSLL YEACGRIINP VNGSVGLMCS GNWQRCQEAV ESVLNGSTIM QVPINDESNN  120
NNTDQIVPLK SCDIRHIAKN SSNTEQVIRT RNGRFKRKAS NSVAEEAAEE YLMTNEPPSK  180
FSITGWDQLN EMDELKRAPS HDSFSVETVE PTLLVNRVDP VKLEENGDVG LELTLGLMSP  240
I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-72LBD family protein