PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33372.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 467aa MW: 53163.4 Da PI: 5.1503

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.8	2.5e-09	17	58	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+++ +k+++++C ++ +lC++C + H+ H++ PHT33372.1 17 RACDNCIKKRARWYCPADDAFLCQNCDASVHSAnplahrHQR 58 78****************************966888844554 PP
2	CCT	67.5	3.7e-23	408	451	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PHT33372.1 408 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 451 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MVSERKLASA MGGKTLRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLAHRHQRVR 60 LKTSSLKEPS SSLDDYLPDL ESPVSVSSVS VSVPSWHRGF TRKARTPRHG RKASKSAGDG 120 DVILMKNPIH IVPEMLSDEN SHDEIEEEQL LYRVPILDPF VAELCSSATN NQEMVENSTT 180 AAAETDSEFK VESKETALQD DICNVDLNRF HGVLPSEMEL AEFAADVENL LGKGLDDHES 240 FDMEGLGLLE VCNDNKEENS MECSMVSHEK VKIEDEGEVE FVTKTTSATT HYDHQFDHST 300 HHDIDINGDT FEFKFDYDSP MNIRREDEVV MKNIREDNNV AIGDENQINK KILLNLDYEG 360 VLTAWADQRS PWTNGERPEL DTNDSWPDCM GNYMGIMNEN AIIVDRGREA RVSRYREKRR 420 TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ANFATTTTTT PNYPMVK

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MVSERKLASA MGGKTLRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLAHRHQRVR  60
LKTSSLKEPS SSLDDYLPDL ESPVSVSSVS VSVPSWHRGF TRKARTPRHG RKASKSAGDG  120
DVILMKNPIH IVPEMLSDEN SHDEIEEEQL LYRVPILDPF VAELCSSATN NQEMVENSTT  180
AAAETDSEFK VESKETALQD DICNVDLNRF HGVLPSEMEL AEFAADVENL LGKGLDDHES  240
FDMEGLGLLE VCNDNKEENS MECSMVSHEK VKIEDEGEVE FVTKTTSATT HYDHQFDHST  300
HHDIDINGDT FEFKFDYDSP MNIRREDEVV MKNIREDNNV AIGDENQINK KILLNLDYEG  360
VLTAWADQRS PWTNGERPEL DTNDSWPDCM GNYMGIMNEN AIIVDRGREA RVSRYREKRR  420
TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ANFATTTTTT PNYPMVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	435	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-91	CO-like family protein