PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32956.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 162aa MW: 17825.2 Da PI: 8.2152

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141	3.9e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k+l++lpe +r da+ss+vyeA+ar++dP+yG+vg+i++lq+q+e l+++la +++ PHT32956.1 14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMLQELPEYQRGDAVSSMVYEANARMKDPIYGCVGTISSLQHQIEFLQKQLAIAQA 112 7**********************************************************************************************9998 PP DUF260 100 e 100 e PHT32956.1 113 E 113 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMLQ 60 ELPEYQRGDA VSSMVYEANA RMKDPIYGCV GTISSLQHQI EFLQKQLAIA QAEIVHMKMQ 120 QPSSMYRGGG GTVANSPGAV SPPSYQHMQS EAHSEFEAYG FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-64	LBD family protein