PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32580.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 634aa MW: 71365.1 Da PI: 8.484

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.6	3.8e-12	440	485	11	56
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++L + F++n+yp+++++e+L k+lg+t qV+ WF N R ++ PHT32580.1 440 NTKRLYKSFKENNYPDRDAKEKLVKELGITAYQVSKWFENARHCQR 485 6899*************************************97665 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MGFGVRQDSR DAGVESELLS AFQAQGQQHV MRQGGDVKGA LPTKHHDDGC SMKKNKNKKY 60 QPTYEQGLID SGYTNIMTYD KDIFKDLRLT KVTKVRIGHG GYIPAKGMGT ITIETQSGTK 120 IIFDVLYVPD FNQNLLSVGQ LLEKGFKLYF KDKNCLIKET SRQDIFKVKM RGRSFSLNPL 180 EEERGFHQLC VEPPLLKEDI PPDDKGWLCP GCDCKVDCID LLNDLQGTDL SATDSREKYI 240 PSSDESNFYS TSKDLTEALP KDDGILGLSS EDSKDDDFNP DYPDKDESVK IESSSSDFTS 300 DSKDFSLIVD TDRLRGKRNL LKNEFSYLMQ SLSPLVLAKR HVERLDYKML NDETYGNESS 360 DSSEKEYEGG PSPKVRNFRN AKGDMASPSS TRVDIKYQCG KQKGNGHTSD SGLFEKLKVG 420 GMSTSKSHSS GKRKESGEVN TKRLYKSFKE NNYPDRDAKE KLVKELGITA YQVSKWFENA 480 RHCQRHSSRW DTIMSQKVFK ESASSSKMTG EPLGTESKRN MNDASCNGVE KLEPPKRCSK 540 GEKWYEVDMS EGDVLIQNIS RKESGKPTAE VDMTNQGSDV TPCNRTSKKQ KAKVIGSANS 600 QNDNMTYQGS MTLPKRRHLR SRKLLHNLLQ RPNS

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MGFGVRQDSR DAGVESELLS AFQAQGQQHV MRQGGDVKGA LPTKHHDDGC SMKKNKNKKY  60
QPTYEQGLID SGYTNIMTYD KDIFKDLRLT KVTKVRIGHG GYIPAKGMGT ITIETQSGTK  120
IIFDVLYVPD FNQNLLSVGQ LLEKGFKLYF KDKNCLIKET SRQDIFKVKM RGRSFSLNPL  180
EEERGFHQLC VEPPLLKEDI PPDDKGWLCP GCDCKVDCID LLNDLQGTDL SATDSREKYI  240
PSSDESNFYS TSKDLTEALP KDDGILGLSS EDSKDDDFNP DYPDKDESVK IESSSSDFTS  300
DSKDFSLIVD TDRLRGKRNL LKNEFSYLMQ SLSPLVLAKR HVERLDYKML NDETYGNESS  360
DSSEKEYEGG PSPKVRNFRN AKGDMASPSS TRVDIKYQCG KQKGNGHTSD SGLFEKLKVG  420
GMSTSKSHSS GKRKESGEVN TKRLYKSFKE NNYPDRDAKE KLVKELGITA YQVSKWFENA  480
RHCQRHSSRW DTIMSQKVFK ESASSSKMTG EPLGTESKRN MNDASCNGVE KLEPPKRCSK  540
GEKWYEVDMS EGDVLIQNIS RKESGKPTAE VDMTNQGSDV TPCNRTSKKQ KAKVIGSANS  600
QNDNMTYQGS MTLPKRRHLR SRKLLHNLLQ RPNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-24	HB-PHD family protein