PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT32162.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 1690aa MW: 185331 Da PI: 6.2819

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT32162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5e-08	825	866	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E e+++d + +G++ +++Ia+ + ++t +c+++++k PHT32162.1 825 PWTSKEREIFIDKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 866 8***************99.*****.*********98 PP
2	Myb_DNA-binding	28.5	3.7e-09	1043	1083	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ + ++r++g +R++ qck ++ PHT32162.1 1043 DWTDEEKSAFIQAVSAYGKD-FIMVSRRVG-TRSRDQCKIFFS 1083 5***************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1690 aa Download sequence
MPPEPLPWDR KDFFKERRHD RSEVLPRWRE PASHHHYTSS RWLPDFRSRA PPPGHGKQGS 60 WQMYPEELGH GFMTSRSNEK IVEDESCRQS RGDAGKYGRN SSSSRENRSF GQRDWRGGGG 120 AHSWEAASPS GSGSVRQNDA TNNQRSLDVM EPHSEHVNTC DQSHSRDQHN KSATANAKAS 180 TGQRFERETS LGSIEWRPLK WTRSGSLSSR GSLSHSGSMG VDSNEIKPEL RLGNSKAVQS 240 LTGDATACVT SAAPSEETTS RKKPRLGWGE GLAKYEKKKV EGPEDNAVKV GTSISGDSVE 300 PSHSQLLNQA DRSPRVAVFP DCPSPATPSS VACSSSPGLE DKQLVKATNI DQVVGNLCGS 360 PNVVSQYYSE GSGFNLENWD LAQISNLNSS INKLLQSEDP SSVDSGFMRS TAVNKLLVWK 420 SDITKALEKT EAEIDSLENE LKTLISGPKN TQLVPSASCS PPKDCNANSH EDQGATSNIA 480 SGPAPLVVDI PDDLVGEEGA NIHENEQTEV KVEDIDSPGS ATSKFVELPS EKDVAPVDAL 540 KHGGIFISDD SKSRRLNVNM CSFTEESAKS RSSDVKLCSF NEEKARDTLV CWERSQPTAS 600 YSYSASNGIL NGGEDALYNL ILAANKDSAR RAFEVFKNLL PVSKCSFDFS RTVRVSLLQI 660 DHAVEERFAK RKQFQQFKEK IIALKFRVHQ HLWKEDIRML SVRRFRAKSQ KKFDLSLRPV 720 QIGHQKHRAT CLHLPSCRRP CNTDLKKNVF FTNAVGNLSL VPSSEILNFA SRLLSELGAK 780 VYRNTLRMPA LILDQKERMM TRFISKNSLV EDPCAVEEER GLINPWTSKE REIFIDKLAT 840 FGKDFRKIAS FLDHKTTADC IEFYYKNHKS DCFERTRRKP DYSKQAKVCS ANRYLVASSG 900 KRWNREANSA SLDILGAASA IAANVEDSIE IQPKGTSKYT VRMITEYKAS RLNELERSNS 960 LDVCHSERET VAVDVLAGIC GSLSSEAMSS CITSSVDPGE GNQEWKHQKV GLSTRLPRTP 1020 EVTQSMDDET CSDESCGEMD PTDWTDEEKS AFIQAVSAYG KDFIMVSRRV GTRSRDQCKI 1080 FFSKARKCLG LDKILPVPGN LERQDVNGGS DPDACSMETK LLCNGKSSLM LEDVSDLCMK 1140 GGISNHNLTS SDEKDGAGEL DSVDILQVNC DVDKQEVEFN RDCDQIGACI GNGRGDENMV 1200 IVSQEGVEIG GDASENGLPD IPCPNEVSAK HLGEEISSPD HDLKDRKAEI AEVGRSNCSL 1260 EDRKPNMVLS GNNSGLAASR GGGFCPLNGF QNMTHLESDS ECKLYLESNI SVQSKQMPEG 1320 ANADKLSEEL ENVCDEQCEN ATQSAELPLP SHSRLAQVES CQILGSYSVG ESALTQFGDP 1380 GCRTSAALQE IQKVGRNLQL DTFSTTGCFL QKCNGTNRGG GSVSDVLIPN REQTAGSSSN 1440 LEKHCRNGDV KLFGQILSKP CPQANPSSNA HCSDGSNQQL KIGSDSFSAS HILDGNSATA 1500 KFERNNFPGS ETHQVRSFGF WDGNRIQTGF SSLPDSAILL AKYPAAFGNY GMSSTKMEQP 1560 TLHGAVKMAE RNLNGVPGFP TNASGNNGVA AADYQVYRNR DVQPFTIEMK QRQEVFSEMQ 1620 RKNGFDVVSG VQQQARGVLV GRGGILQCTG VSDPVAAIKM HYAKAEQFSG QTASIIREDD 1680 SWRSKGDVSR

Sequence ? help Back to Top

Protein Sequence Length: 1690 aa Download sequence

MPPEPLPWDR KDFFKERRHD RSEVLPRWRE PASHHHYTSS RWLPDFRSRA PPPGHGKQGS  60
WQMYPEELGH GFMTSRSNEK IVEDESCRQS RGDAGKYGRN SSSSRENRSF GQRDWRGGGG  120
AHSWEAASPS GSGSVRQNDA TNNQRSLDVM EPHSEHVNTC DQSHSRDQHN KSATANAKAS  180
TGQRFERETS LGSIEWRPLK WTRSGSLSSR GSLSHSGSMG VDSNEIKPEL RLGNSKAVQS  240
LTGDATACVT SAAPSEETTS RKKPRLGWGE GLAKYEKKKV EGPEDNAVKV GTSISGDSVE  300
PSHSQLLNQA DRSPRVAVFP DCPSPATPSS VACSSSPGLE DKQLVKATNI DQVVGNLCGS  360
PNVVSQYYSE GSGFNLENWD LAQISNLNSS INKLLQSEDP SSVDSGFMRS TAVNKLLVWK  420
SDITKALEKT EAEIDSLENE LKTLISGPKN TQLVPSASCS PPKDCNANSH EDQGATSNIA  480
SGPAPLVVDI PDDLVGEEGA NIHENEQTEV KVEDIDSPGS ATSKFVELPS EKDVAPVDAL  540
KHGGIFISDD SKSRRLNVNM CSFTEESAKS RSSDVKLCSF NEEKARDTLV CWERSQPTAS  600
YSYSASNGIL NGGEDALYNL ILAANKDSAR RAFEVFKNLL PVSKCSFDFS RTVRVSLLQI  660
DHAVEERFAK RKQFQQFKEK IIALKFRVHQ HLWKEDIRML SVRRFRAKSQ KKFDLSLRPV  720
QIGHQKHRAT CLHLPSCRRP CNTDLKKNVF FTNAVGNLSL VPSSEILNFA SRLLSELGAK  780
VYRNTLRMPA LILDQKERMM TRFISKNSLV EDPCAVEEER GLINPWTSKE REIFIDKLAT  840
FGKDFRKIAS FLDHKTTADC IEFYYKNHKS DCFERTRRKP DYSKQAKVCS ANRYLVASSG  900
KRWNREANSA SLDILGAASA IAANVEDSIE IQPKGTSKYT VRMITEYKAS RLNELERSNS  960
LDVCHSERET VAVDVLAGIC GSLSSEAMSS CITSSVDPGE GNQEWKHQKV GLSTRLPRTP  1020
EVTQSMDDET CSDESCGEMD PTDWTDEEKS AFIQAVSAYG KDFIMVSRRV GTRSRDQCKI  1080
FFSKARKCLG LDKILPVPGN LERQDVNGGS DPDACSMETK LLCNGKSSLM LEDVSDLCMK  1140
GGISNHNLTS SDEKDGAGEL DSVDILQVNC DVDKQEVEFN RDCDQIGACI GNGRGDENMV  1200
IVSQEGVEIG GDASENGLPD IPCPNEVSAK HLGEEISSPD HDLKDRKAEI AEVGRSNCSL  1260
EDRKPNMVLS GNNSGLAASR GGGFCPLNGF QNMTHLESDS ECKLYLESNI SVQSKQMPEG  1320
ANADKLSEEL ENVCDEQCEN ATQSAELPLP SHSRLAQVES CQILGSYSVG ESALTQFGDP  1380
GCRTSAALQE IQKVGRNLQL DTFSTTGCFL QKCNGTNRGG GSVSDVLIPN REQTAGSSSN  1440
LEKHCRNGDV KLFGQILSKP CPQANPSSNA HCSDGSNQQL KIGSDSFSAS HILDGNSATA  1500
KFERNNFPGS ETHQVRSFGF WDGNRIQTGF SSLPDSAILL AKYPAAFGNY GMSSTKMEQP  1560
TLHGAVKMAE RNLNGVPGFP TNASGNNGVA AADYQVYRNR DVQPFTIEMK QRQEVFSEMQ  1620
RKNGFDVVSG VQQQARGVLV GRGGILQCTG VSDPVAAIKM HYAKAEQFSG QTASIIREDD  1680
SWRSKGDVSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-172	MYB family protein