PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT31549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 110aa MW: 12482.2 Da PI: 10.8598 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 1.9e-20 | 20 | 69 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n+ r+vtfskRr g++KKA+EL++L++ae+ +++ s ++++l+++ PHT31549.1 20 KPIDNQNSRHVTFSKRRLGLFKKASELCILTGAEIVILVQSlKRQRLFTF 69 78*************************************99567889988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MNVNTNVFKK TQGRRKTAIK PIDNQNSRHV TFSKRRLGLF KKASELCILT GAEIVILVQS 60 LKRQRLFTFG HPSADAVIDR YITGISSSSL SSSTTDEFNL QQNNHYFSYV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-23 | M-type_MADS family protein |