PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31541.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20264.1 Da    PI: 8.8128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57e-182069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vtf kRr g++KKA+EL++ ++ae+ +++ s ++++l+++
  PHT31541.1 20 KKIDNQNSRHVTFLKRRLGLFKKASELCIFTGAEIVILVPSlKRQHLFTF 69
                68*************************************99567899998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MNVNTNVVKK TQGRRKIAIK KIDNQNSRHV TFLKRRLGLF KKASELCIFT GAEIVILVPS  60
LKRQHLFTFG HPSADAIIDR YVTRISSSLL SSSTTDEFNL QQNNQYYSHM CKDLEAGKKK  120
KENIEEEKLV NIDDNNNGGY WWNEPIDTKG IDELEEFMVA LENLKKNVTS RVDELC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-27M-type_MADS family protein