PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31537.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22753.6 Da    PI: 7.1453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.61.2e-162062143
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                k+i+n+  r+vtfskRr g++K A+EL +L++ae+ +++ s +
  PHT31537.1 20 KPIDNQHSRHVTFSKRRLGLFKRASELYILTGAEIVILVQSLK 62
                78************************************99954 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MNVNTNVVKK TQGRRKIAIK PIDNQHSRHV TFSKRRLGLF KRASELYILT GAEIVILVQS  60
LKHQCLFTFG HPSADAVIDH YVTGISFSSL SSSTTDEFNL QQNNQYYSHM CKDLEEEKKK  120
KENIEEKKVV NIDDNNNGGY WWNEPIDTKG IDELEEFMVT LENLKKNVTT RVDELSMLNG  180
SSSSNSTMKI ARFGGEDQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-24M-type_MADS family protein