PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT31535.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25210.9 Da    PI: 9.2649
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT31535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181764249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr g++KK +EL++LC++e+a+i+f +  k++ +
  PHT31535.1 17 KIEVKNHLQVTFSKRRSGLFKKTSELCTLCGVEIAIIVFFPARKVFSF 64
                58888899*******************************999988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAKKPSSMGR QKIKIAKIEV KNHLQVTFSK RRSGLFKKTS ELCTLCGVEI AIIVFFPARK  60
VFSFGHPNVE SLIDRFLLRN NTNNNPITNN SLQLVEAHRN ANVCGLNLQL TQIIGEVEIE  120
KKRGESLDQM RKTSQSQCWW EAPISQLDLQ ELEQLKDSME ALKKYVTNQA IKFMVNEIAN  180
SSTFFGDIGN GIFDNYDIKP PRTMPSSSDL HNQSLGFDSA ALF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-51M-type_MADS family protein