PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT30676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15057.7 Da PI: 8.9591 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.6 | 2.9e-17 | 14 | 52 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 snr +s+R++g+lKKA+ELSvLCd+++ + +fs++gk PHT30676.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPSGK 52 788889********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence |
MGRAKMKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPS GKPSVYKSDS 60 STFEDMITKI AEVNPEERAK RKMECLEVSA AFLIIGMSCF HSFLHSKFKV LCLMNDLLWI 120 EHLDNKESLQ EV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 6e-27 | M-type_MADS family protein |