PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24014.6 Da PI: 9.9608 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.2e-22 | 16 | 65 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50 en+sn qvtfskRr+g++KKA+EL++LC+ae+ +++fs+ ++k+y ++ PHT29748.1 16 MENESNLQVTFSKRRAGLFKKASELCTLCGAEITIVVFSPgkDNKVYSFA 65 69************************************854489999886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MPRRRKGRKR VDIVKMENES NLQVTFSKRR AGLFKKASEL CTLCGAEITI VVFSPGKDNK 60 VYSFAHPSVE LLVDRFLGRD LPPPNNEGHH NHLLMNHRNV VLRELNKEVM NMEEILQMEK 120 AHGESILEIR RRANGGWWEA PINALNLSQL KQLMEAMEFL KQDVEKEAEQ QQMVTNVGLP 180 FLTFGSALSP TNGARAISSS HGHNVGAPLA NRA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 6 | PRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-49 | M-type_MADS family protein |