PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29744.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22265.4 Da    PI: 10.0381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-211663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 +n+sn qvtfskRr+g++KKA+EL++LC+ae+a ++fs+   +k+y 
  PHT29744.1 16 MKNESNMQVTFSKRRAGLFKKASELCTLCGAEIATVVFSPgkANKVYS 63
                58************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MARLSKGRKK VEIVKMKNES NMQVTFSKRR AGLFKKASEL CTLCGAEIAT VVFSPGKANK  60
VYSFGHPSVE LLVDRFLGRD LPSPNDDDRY NHLIRAHRNT GQRGLNKEVM DMQESLHKEK  120
AIGKSLLESG REAYDRLSLS QLEQLKEALE AQKRKVEFEA KLQQMGSDAP LPFLTFGSAL  180
SSTSGDGASS SHGPNVGAPF PN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-42M-type_MADS family protein