PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT29741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 97aa MW: 11036.8 Da PI: 10.8012 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 1e-21 | 16 | 65 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50 en+sn qvtfsk r+g++KKA+EL++LC+ae+a+++fs+ +k+y +s PHT29741.1 16 MENESNLQVTFSKHRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYSFS 65 69************************************863368888887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 97 aa Download sequence |
MPRRRKGRKR VDIVKMENES NLQVTFSKHR AGLFKKASEL CTLCGAEIAI VVFSPGKANK 60 VYSFSHPSVE LLVDRFLGRD LPPPNNEGRH NHLLMNH |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 6 | PRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-36 | M-type_MADS family protein |