PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 21469.4 Da PI: 7.9655 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.6 | 1e-20 | 2 | 48 | 4 | 48 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 +n+ n qvtfskRr+g++KKA+EL++LC+ae+a ++fs+ +k+y PHT29740.1 2 KNECNMQVTFSKRRAGLFKKASELCTLCGAEIATVVFSPgkANKVYS 48 7999*********************************9722456665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MKNECNMQVT FSKRRAGLFK KASELCTLCG AEIATVVFSP GKANKVYSFG HPLVELLVDR 60 FLGRDLPPPN DDDRYNHLIR AHRNTGQRGL NKEVMDMQES LQKEKAIGKS LLESGRGAYD 120 RVCESPIIEG LSLSQLEQLK EALEAQKRKV EFEAKLQQMG SDAPLPFLTF GSALSSTSSD 180 GASSSHGPNV GAPFPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-37 | M-type_MADS family protein |