PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27620.2 Da    PI: 8.6012
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.6e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                kri+nk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+gklye++s
  PHT29688.1  9 KRIDNKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFCS 59
                79***********************************************96 PP

2K-box98.78.8e-33821739100
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + +a++++ +qe+ kLk ++e Lq++qRh+lGedL++L++k+L+qLe+qL++sl++iRs+K++++l+q+ el +ke++l e nk+L++klee
  PHT29688.1  82 QPSADSQNNYQEYLKLKTRVEVLQQSQRHMLGEDLGELNIKDLEQLEHQLDSSLRQIRSTKTQHMLDQLAELHQKEQSLTEMNKSLKTKLEE 173
                 467789***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGKVELKR IDNKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFCSS  60
SSMSKTLERY HRYNYGALEG TQPSADSQNN YQEYLKLKTR VEVLQQSQRH MLGEDLGELN  120
IKDLEQLEHQ LDSSLRQIRS TKTQHMLDQL AELHQKEQSL TEMNKSLKTK LEELGVAFQT  180
SWHSGEQSVQ YRQQQPEGFF QHVDYNNTVS DIRYGYAAML PKHAAPSTQD ASGVVPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-89MIKC_MADS family protein