PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20483.7 Da PI: 9.8663 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.6 | 5.3e-21 | 25 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51 kri++k rqv f+kRr+g++KKA+ LS+LC+++v v+i+s++ g+l+eyss PHT29531.1 25 KRIQDKNCRQVAFCKRRKGLIKKANQLSILCNVDVGVVIISNNgtGRLHEYSS 77 79***************************************972257****96 PP | |||||||
2 | K-box | 40.2 | 1.5e-14 | 111 | 179 | 28 | 96 |
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 e Lq+ R+l + + L++ +L +L+++L++sl++iRskK++l+le + +l +kek+l+ee+k L++ PHT29531.1 111 GELLQTAERQLEETNADGLTVTDLVHLQNELQTSLTQIRSKKTQLMLETVTDLLEKEKQLREEKKLLKN 179 57899999********************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
METCGNIGLG LKKKKEMGRR KLEIKRIQDK NCRQVAFCKR RKGLIKKANQ LSILCNVDVG 60 VVIISNNGTG RLHEYSSTNS VTGILQRYES HVQAEKEISG EHSMYSSMKI GELLQTAERQ 120 LEETNADGLT VTDLVHLQNE LQTSLTQIRS KKTQLMLETV TDLLEKEKQL REEKKLLKNN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65060.1 | 6e-38 | MIKC_MADS family protein |