PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22531.7 Da PI: 8.7048 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.2 | 3.9e-22 | 9 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeyss 51 krie+k+ rqv fskRr+g++KKA+ LS+LCd++v v+i+s++g+ l+eyss PHT29530.1 9 KRIEDKRCRQVAFSKRRKGLIKKANALSILCDVDVGVVIISNDGTarLHEYSS 61 79*****************************************9544999986 PP | |||||||
2 | K-box | 42.5 | 2.8e-15 | 98 | 171 | 26 | 99 |
K-box 26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + e Lq++ R+l + ++L + +L +Le++L+ +l +iRs++++llle+++ l +kek l+eenk L+ +++ PHT29530.1 98 ATRELLQETERQLEKTNADDLAVTDLIHLENELQAALIQIRSRQTNLLLESVKGLHEKEKLLREENKHLEDNIA 171 45689****************************************************************98875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MGRRKLEIKR IEDKRCRQVA FSKRRKGLIK KANALSILCD VDVGVVIISN DGTARLHEYS 60 STNSVTGILQ RYDSHVETEK EISAEIQVTE HSKYSSMATR ELLQETERQL EKTNADDLAV 120 TDLIHLENEL QAALIQIRSR QTNLLLESVK GLHEKEKLLR EENKHLEDNI ATTIKKNRRG 180 NEMSDLQPQR VTLNFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65060.1 | 5e-34 | MIKC_MADS family protein |