PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29430.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 171aa MW: 19372.6 Da PI: 6.8959

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv+apyfp e+p kf vhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ PHT29430.1 12 PCAACKFLRRKCLPSCVFAPYFPPEEPIKFTTVHKVFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 110 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MSSTSSYYST PPCAACKFLR RKCLPSCVFA PYFPPEEPIK FTTVHKVFGA SNVSKLLNEI 60 QPHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYTNYEQ 120 ANNNQIMENH QERSNFQYGR RMVPSYYSSA RNNDISGDHN NISTDNCDGD S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-64	LBD family protein