PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT29366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 17980.9 Da PI: 9.6536 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.4 | 9.3e-19 | 16 | 51 | 3 | 38 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 +n+sn qvtfskRr g++KKA+EL++LC+ae+a++ PHT29366.1 16 MKNESNMQVTFSKRRVGLFKKASELCTLCGAEIAIM 51 58*******************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence |
MARLSKGRKK VEIVKMKNES NMQVTFSKRR VGLFKKASEL CTLCGAEIAI MGLPPLNDDD 60 CHNHLIRAHR NTGQRGLNKE VMDMQESLRK EKAIGKSLLE SGRGAYDRVC ESPIIEGLSL 120 SQLEQLKKAL ESQKRKVEFE AELQQMGSDA PLPFCHLWK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-27 | M-type_MADS family protein |