PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28875.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 411aa MW: 45765.5 Da PI: 9.8683

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PHT28875.1 57 FICEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	14.3	0.00012	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ PHT28875.1 134 WKCEKCSKKYAVQSDWKAHTKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MMSGDLFSIH QQQVVEVPNP NNSKANSSSS KKRRNLPDPD AEVIALSPKT LMATNRFICE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK QEIVKKKVYI CPEKACVHHD PSRALGDLTG 120 IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKTCGTRE YKCDCGTLFS RKDSFITHRA 180 FCDALAEESA RITSVGTTTN TLNFNHHQQQ QPNLPIGISQ ISTTFSQDFT SMTTSNNNSL 240 HQKPRLSHWL NQANFSSNSA GLILPDHHHH MVQIPSPNMF NNTSSINAPM SSAPMSATAL 300 LQKAAQIGST KSTTTNCNFS NTFGVMNSSS SSSPSSNNVT QIFNSNTNNN VLLNGCPDMH 360 AQNIHFNLDN SLTRDFLGMG NEGGQPFLPQ ELVKFASMNS AMGLSHYTNG Q

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MMSGDLFSIH QQQVVEVPNP NNSKANSSSS KKRRNLPDPD AEVIALSPKT LMATNRFICE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK QEIVKKKVYI CPEKACVHHD PSRALGDLTG  120
IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKTCGTRE YKCDCGTLFS RKDSFITHRA  180
FCDALAEESA RITSVGTTTN TLNFNHHQQQ QPNLPIGISQ ISTTFSQDFT SMTTSNNNSL  240
HQKPRLSHWL NQANFSSNSA GLILPDHHHH MVQIPSPNMF NNTSSINAPM SSAPMSATAL  300
LQKAAQIGST KSTTTNCNFS NTFGVMNSSS SSSPSSNNVT QIFNSNTNNN VLLNGCPDMH  360
AQNIHFNLDN SLTRDFLGMG NEGGQPFLPQ ELVKFASMNS AMGLSHYTNG Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	4e-99	C2H2 family protein