PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28065.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 326aa MW: 36193.1 Da PI: 5.4951

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	120.2	8.8e-38	2	98	5	99
NF-YC 5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 fw+ + ie++t+++nh+lPlari+k k ++vk+isae+P+l+skacelfi eltlrsw ha+en+r +++ +d+aaa+ rtd fdfl vp+d PHT28065.1 2 FWHFKrheIEHSTNLRNHQLPLARIRKTAKDTPNVKKISAEVPILFSKACELFIQELTLRSWFHADENNRYSVQGNDVAAAIRRTDHFDFLAH-VPTD 98 56543344**********************************************************************************975.5555 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MFWHFKRHEI EHSTNLRNHQ LPLARIRKTA KDTPNVKKIS AEVPILFSKA CELFIQELTL 60 RSWFHADENN RYSVQGNDVA AAIRRTDHFD FLAHVPTDEI MGEATAAATV TGVVGSTSSG 120 VPDYNPPMGQ PGPSEVTMGR ASVPLVHPSA YFQPQSWQPT PSLPQVWQPQ PPQSQAWPSS 180 SSALQPQPLL QWWQPPPPQF QAWQLPPSFS QAWQPQPPQS LAWPSSSGAW QPQPLPSPSS 240 SQGWQLPPPQ SQAWQLLPSS SQAWQLQPSS SQAWQLQPSS SQEGQPQPPP SQECQWVWQP 300 VEDNPDNPSG DGGNPDGHRT DILEGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-46	NF-YC family protein