PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27995.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 679aa MW: 75443.8 Da PI: 4.6561

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.5e-12	516	559	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ ++I + ++ gRt+ q+k+++ k PHT27995.1 516 RTRWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 559 78******************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MDLLDDIFAG GASKTVKAGG KFQPKAKPRP LKKGPAVASS AVSLTSKPTG DTVATDSFEA 60 LKTAKNSQNC YEQSYVSAEP SLEHPLKAET LGPSVGSSLD AKSSTPATDP SAVHVAGAEK 120 RQEQFLDPAS SVDDSAPSAS HLQSDEVAAA QDPSTFQGSV LPEMDPYPSL ESDILGVTTI 180 SGQSRRFQPK PKLRVYRERY DTIIPDSDVG ESVSSQPDSH YVHSEMGFVD NGKEHELPAA 240 VVLDSLARGF DNNIITESAH EEYVVEASLP DSGIPAKHSE ATVQMPEEPV SQRPKTKKQK 300 VRASNLSAIS EENRESRSLR SRRKSVNANR LVDESEEVID DGEYVPEHPN DSVTNGNDDD 360 VLVENDSQGE TTLKRSKKTV TKEGKRVRKS KKTAEASDQV ANKKPKKFSH STRQKRRTVD 420 KALLEAPEDE IDYSKVPIKD LILLAEHKER LVKKDPAASQ IPTTDQSVGA SFSNYDDDET 480 YAVDEDGEAN DHNKSPRGED TSAYFNYQTY MDKTPRTRWS KQDTELFYEA VQQFGTDLSL 540 IQQLFPGRTR RQLKLKYKKE ERKNPFMLHD ALTNRSKDHS HFERVIEQLK QIEAEELQYA 600 DKDESIGLTG EEEMEGTQEE GEAMSEKQHA QEEEAMPEHV DEKEVEALGQ DVPGIESPVK 660 EDYDSEDDFL KWSQYTSEV

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MDLLDDIFAG GASKTVKAGG KFQPKAKPRP LKKGPAVASS AVSLTSKPTG DTVATDSFEA  60
LKTAKNSQNC YEQSYVSAEP SLEHPLKAET LGPSVGSSLD AKSSTPATDP SAVHVAGAEK  120
RQEQFLDPAS SVDDSAPSAS HLQSDEVAAA QDPSTFQGSV LPEMDPYPSL ESDILGVTTI  180
SGQSRRFQPK PKLRVYRERY DTIIPDSDVG ESVSSQPDSH YVHSEMGFVD NGKEHELPAA  240
VVLDSLARGF DNNIITESAH EEYVVEASLP DSGIPAKHSE ATVQMPEEPV SQRPKTKKQK  300
VRASNLSAIS EENRESRSLR SRRKSVNANR LVDESEEVID DGEYVPEHPN DSVTNGNDDD  360
VLVENDSQGE TTLKRSKKTV TKEGKRVRKS KKTAEASDQV ANKKPKKFSH STRQKRRTVD  420
KALLEAPEDE IDYSKVPIKD LILLAEHKER LVKKDPAASQ IPTTDQSVGA SFSNYDDDET  480
YAVDEDGEAN DHNKSPRGED TSAYFNYQTY MDKTPRTRWS KQDTELFYEA VQQFGTDLSL  540
IQQLFPGRTR RQLKLKYKKE ERKNPFMLHD ALTNRSKDHS HFERVIEQLK QIEAEELQYA  600
DKDESIGLTG EEEMEGTQEE GEAMSEKQHA QEEEAMPEHV DEKEVEALGQ DVPGIESPVK  660
EDYDSEDDFL KWSQYTSEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	392	LKRSKKTVTKEGKRVRKSKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-51	MYB_related family protein