PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27928.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 178aa MW: 19799.5 Da PI: 7.2706

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.7	1.1e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ PHT27928.1 7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPIQQRSDAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAQA 105 7***********************************************************************************************998 PP DUF260 100 e 100 e PHT27928.1 106 E 106 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MGTGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNVSK MLQELPIQQR 60 SDAVSSLVYE ANARVRDPVY GCVGAISFLQ NQVSQLQMQL AVAQAEILCI QMQQEPVPCN 120 LPTTLMEPDQ LDKLPFSTSN NNSNHNNNFN NNLQQYLSFA SSSSSIMQDP VKRESLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-78	LBD family protein